New publication!

Our new article has been accepted in iScience: Welzel M, Dressler H, Heider D: Turbo autoencoders for the DNA data storage channel with Autoturbo-DNA. iScience 2024, 27(5):109575. (Link) Summary DNA, with its high storage density and long-term stability, is a potential candidate for a next-generation storage device. The DNA data storage channel, composed of synthesis,…

READ MORE 

New publication!

Our new article has been accepted in Computers in Biology and Medicine: Ren Y, Li C, Sapugahawatte DN, Zhu C, Spänig S, Jamrozy D, Rothen J, Daubenberger CA, Bentley SD, Ip M, Heider D: Predicting hosts and cross-species transmission of Streptococcus agalactiae by interpretable machine learning. Computers in Biology and Medicine 2024, 171:108185. (Link) Abstract…

READ MORE 

New publication!

Our new article has been accepted in Journal of Neurology: Heider D, Henning Stetefeld, Andreas Meisel, Julian Bösel, Marie Artho, Ralf Linker, Klemens Angstwurm, Bernhard Neumann: POLAR: prediction of prolonged mechanical ventilation in patients with myasthenic crisis. Journal of Neurology 2024, in press. (Link)

READ MORE 

CSBJ

New publication!

Our new article has been accepted in Computational and Structural Biotechnology Journal: Sarumi OA, Hahn M, Heider D: NeuralBeds: Neural Embeddings for Efficient DNA Data Compression and Optimized Similarity Search. Computational and Structural Biotechnology Journal 2024, in press. (Link) Abstract The availability of high throughput sequencing tools coupled with the declining costs in the production…

READ MORE 

New publication!

Our new article has been accepted in Computer Methods and Programs in Biomedicine: Anžel A, Heider D, Hattab G: Interactive polar diagrams for model comparison. Computer Methods and Programs in Biomedicine 2023, 242:107843. (Link) Abstract Objective Evaluating the performance of multiple complex models, such as those found in biology, medicine, climatology, and machine learning, using…

READ MORE 

New publication!

Our new article has been accepted in Journal of Medical Internet Research: Tajabadi M, Grabenhenrich, Riberio A, Leyer M, Heider D: Sharing Data With Shared Benefits: Artificial Intelligence Perspective. Journal of Medical Internet Research 2023, 25:e47540. (Link) Abstract Artificial intelligence (AI) and data sharing go hand in hand. In order to develop powerful AI models…

READ MORE 

New publication!

Our new article has been accepted in Bioinformatics Advances: Schwarz PM, Welzel M, Heider D, Freisleben B: RepairNatrix – a Snakemake workflow for processing DNA sequencing data for DNA storage. Bioinformatics Advances 2023, in press. (Link) Abstract Motivation There has been rapid progress in the development of error-correcting and constrained codes for DNA storage systems…

READ MORE 

New publication!

Our new article has been accepted in Journal of Medical Internet Research: Matschinske J, Späth J, Bakhtiari M, Probul N, Kazemi Majdabadi MM, Nasirigerdeh R, Torkzadehmahani R, Hartebrodt A, Orban B-A, Fejér S-J, Zolotareva O, Das S, Baumbach L, Pauling JK, Tomašević O, Bihari B, Bloice M, Donner NC, Fdhila W, Frisch T, Hauschild A-C,…

READ MORE 

New publication!

Our new article has been accepted in Frontiers in Genetics: Waechter C, Fehse L, Welzel M, Heider D, Babalija L, Cheko J, Mueller J, Pöling J, Braun T, Pankuweit S, Weihe E, Kinscherf R, Schieffer B, Luesebrink U, Soufi M, Ruppert V: Comparative analysis of full-length 16s ribosomal RNA genome sequencing in human fecal samples…

READ MORE 

New publication!

Our new article has been accepted in EBioMedicine: Hess T, Maj C, Gehlen J, Borisov O, Haas SL, Gockel I, et al.: Dissecting the genetic heterogeneity of gastric cancer. EBioMedicine 2023, 92:104616. (Link) Summary Background Gastric cancer (GC) is clinically heterogenous according to location (cardia/non-cardia) and histopathology (diffuse/intestinal). We aimed to characterize the genetic risk…

READ MORE