Our new article has been accepted in Computer Methods and Programs in Biomedicine: Anžel A, Heider D, Hattab G: Interactive polar diagrams for model comparison. Computer Methods and Programs in Biomedicine 2023, 242:107843. (Link) Abstract Objective Evaluating the performance of multiple complex models, such as those found in biology, medicine, climatology, and machine learning, using…
Our new article has been accepted in Journal of Medical Internet Research: Tajabadi M, Grabenhenrich, Riberio A, Leyer M, Heider D: Sharing Data With Shared Benefits: Artificial Intelligence Perspective. Journal of Medical Internet Research 2023, 25:e47540. (Link) Abstract Artificial intelligence (AI) and data sharing go hand in hand. In order to develop powerful AI models…
Our new article has been accepted in Bioinformatics Advances: Schwarz PM, Welzel M, Heider D, Freisleben B: RepairNatrix – a Snakemake workflow for processing DNA sequencing data for DNA storage. Bioinformatics Advances 2023, in press. (Link) Abstract Motivation There has been rapid progress in the development of error-correcting and constrained codes for DNA storage systems…
Our new article has been accepted in Journal of Medical Internet Research: Matschinske J, Späth J, Bakhtiari M, Probul N, Kazemi Majdabadi MM, Nasirigerdeh R, Torkzadehmahani R, Hartebrodt A, Orban B-A, Fejér S-J, Zolotareva O, Das S, Baumbach L, Pauling JK, Tomašević O, Bihari B, Bloice M, Donner NC, Fdhila W, Frisch T, Hauschild A-C,…
Our new article has been accepted in Frontiers in Genetics: Waechter C, Fehse L, Welzel M, Heider D, Babalija L, Cheko J, Mueller J, Pöling J, Braun T, Pankuweit S, Weihe E, Kinscherf R, Schieffer B, Luesebrink U, Soufi M, Ruppert V: Comparative analysis of full-length 16s ribosomal RNA genome sequencing in human fecal samples…
Our new article has been accepted in EBioMedicine: Hess T, Maj C, Gehlen J, Borisov O, Haas SL, Gockel I, et al.: Dissecting the genetic heterogeneity of gastric cancer. EBioMedicine 2023, 92:104616. (Link) Summary Background Gastric cancer (GC) is clinically heterogenous according to location (cardia/non-cardia) and histopathology (diffuse/intestinal). We aimed to characterize the genetic risk…
Our new article has been accepted in Frontiers in Medicine: Jung AL, Han M, Griss K, Bertrams W, Nell C, Greulich T, Klemmer A, Pott H, Heider D, Vogelmeier CF, Hippenstiel S, Suttorp NW, Schmeck BT: Novel protein biomarkers for pneumonia and acute exacerbations in COPD: a pilot study. Frontiers in Medicine 2023, 10:1180746. (Link)…
Our new article has been accepted in Frontiers in Genetics: Klau JH, Maj C, Klinkhammer H, Krawitz PM, Mayer A, Hilmmer AM, Schumacher J, Heider D: AI-based multi-PRS models outperform classical single-PRS models. Frontiers in Genetics 2023, 14:1217860. (Link) Abstract Polygenic risk scores (PRS) calculate the risk for a specific disease based on the weighted…
Our new article has been accepted in CSBJ: Müller P, Velazquez Camacho O, Yazbeck AM, Wölwer C, Zhai W, Schumacher J, Heider D, Buettner R, Quaas A, Hillmer AM: Why loss of Y? A pan-cancer genome analysis of tumors with loss of Y chromosome. Computational and Structural Biotechnology Journal 2023, 21:1573-1583. (Link) Abstract Loss of…
Our new article has been accepted in Bioinformatics: Martin R, Nguyen MK, Lowack N, Heider D: ODNA: Identification of Organellar DNA by Machine Learning. Bioinformatics 2023, in press. (Link) Abstract MotivationIdentifying organellar DNA, such as mitochondrial or plastid sequences, inside a whole genome assembly, remains challenging and requires biological background knowledge. To address this, we…
