genome
Class Analyser

java.lang.Object
  extended by genome.Analyser

public class Analyser
extends java.lang.Object

Author:
Dominik Heider

Field Summary
 int Alanin
           
 int Arginin
           
 int Arginin2
           
 int Asparagin
           
 int Asparaginsaure
           
 int Cystein
           
 int gc
           
 int Glutamin
           
 int Glutaminsaure
           
 int Glycin
           
 int Histidin
           
 int Isoleucin
           
 int Leucin
           
 int Leucin2
           
 int Lysin
           
 int Methionin
           
 int Phenylalanin
           
 int Prolin
           
 int Serin
           
 int Serin2
           
 int Stopcodon
           
 int Threonin
           
 int Tryptophan
           
 int Tyrosin
           
 int Valin
           
 
Constructor Summary
Analyser()
          Sets all Register to zero
 
Method Summary
 void analyse(char[] genome)
          analyses a given RNA sequence
 float countAllAminoacids()
           
 int getAlanin()
           
 int getArginin()
           
 int getArginin2()
           
 int getAsparagin()
           
 int getAsparaginsaure()
           
 int getCystein()
           
 int getGlutamin()
           
 int getGlutaminsaure()
           
 int getGlycin()
           
 int getHistidin()
           
 int getIsoleucin()
           
 int getLeucin()
           
 int getLeucin2()
           
 int getLysin()
           
 int getMethionin()
           
 int getPhenylalanin()
           
 int getProlin()
           
 int getSerin()
           
 int getSerin2()
           
 int getStopcodon()
           
 int getThreonin()
           
 int getTryptophan()
           
 int getTyrosin()
           
 int getValin()
           
 float getVariables()
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

Alanin

public int Alanin

Arginin

public int Arginin

Arginin2

public int Arginin2

Asparagin

public int Asparagin

Asparaginsaure

public int Asparaginsaure

Cystein

public int Cystein

Glutamin

public int Glutamin

Glutaminsaure

public int Glutaminsaure

Glycin

public int Glycin

Histidin

public int Histidin

Isoleucin

public int Isoleucin

Leucin

public int Leucin

Leucin2

public int Leucin2

Lysin

public int Lysin

Methionin

public int Methionin

Phenylalanin

public int Phenylalanin

Prolin

public int Prolin

Serin

public int Serin

Serin2

public int Serin2

Threonin

public int Threonin

Tryptophan

public int Tryptophan

Tyrosin

public int Tyrosin

Valin

public int Valin

Stopcodon

public int Stopcodon

gc

public int gc
Constructor Detail

Analyser

public Analyser()
Sets all Register to zero

Method Detail

analyse

public void analyse(char[] genome)
analyses a given RNA sequence

Parameters:
genome - the RNA sequence

countAllAminoacids

public float countAllAminoacids()
Returns:
the count of all resulting aminoacids

getVariables

public float getVariables()
Returns:
the count of the AminoAcids with synonymous substitutions

getAlanin

public int getAlanin()
Returns:
Returns the count of Alanine.

getArginin

public int getArginin()
Returns:
Returns the count of Arginine.

getArginin2

public int getArginin2()
Returns:
Returns the count of the 2nd form of Arginine.

getAsparagin

public int getAsparagin()
Returns:
Returns the count of Asparagine.

getAsparaginsaure

public int getAsparaginsaure()
Returns:
Returns the count of Aspartic acid.

getCystein

public int getCystein()
Returns:
Returns the count of Cysteine.

getGlutamin

public int getGlutamin()
Returns:
Returns the count of Glutamine.

getGlutaminsaure

public int getGlutaminsaure()
Returns:
Returns the count of Glutamic acid.

getGlycin

public int getGlycin()
Returns:
Returns the count of Glycine.

getHistidin

public int getHistidin()
Returns:
Returns the count of Histidine.

getIsoleucin

public int getIsoleucin()
Returns:
Returns the count of Isoleucine.

getLeucin

public int getLeucin()
Returns:
Returns the count of Leucine.

getLeucin2

public int getLeucin2()
Returns:
Returns the count of the 2nd form of Leucine.

getLysin

public int getLysin()
Returns:
Returns the count of Lysine.

getMethionin

public int getMethionin()
Returns:
Returns the count of Methionine.

getPhenylalanin

public int getPhenylalanin()
Returns:
Returns the count of Phenylalanine.

getProlin

public int getProlin()
Returns:
Returns the count of Proline.

getSerin

public int getSerin()
Returns:
Returns the count of Serine.

getSerin2

public int getSerin2()
Returns:
Returns the count of the 2nd form of Serine.

getStopcodon

public int getStopcodon()
Returns:
Returns the count of stopcodon.

getThreonin

public int getThreonin()
Returns:
Returns the count of Threonine.

getTryptophan

public int getTryptophan()
Returns:
Returns the count of Tryptophan.

getTyrosin

public int getTyrosin()
Returns:
Returns the count of Tyrosine.

getValin

public int getValin()
Returns:
Returns the count of Valine.