genome
Class Analyser
java.lang.Object
genome.Analyser
public class Analyser
- extends java.lang.Object
- Author:
- Dominik Heider
Constructor Summary |
Analyser()
Sets all Register to zero |
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Alanin
public int Alanin
Arginin
public int Arginin
Arginin2
public int Arginin2
Asparagin
public int Asparagin
Asparaginsaure
public int Asparaginsaure
Cystein
public int Cystein
Glutamin
public int Glutamin
Glutaminsaure
public int Glutaminsaure
Glycin
public int Glycin
Histidin
public int Histidin
Isoleucin
public int Isoleucin
Leucin
public int Leucin
Leucin2
public int Leucin2
Lysin
public int Lysin
Methionin
public int Methionin
Phenylalanin
public int Phenylalanin
Prolin
public int Prolin
Serin
public int Serin
Serin2
public int Serin2
Threonin
public int Threonin
Tryptophan
public int Tryptophan
Tyrosin
public int Tyrosin
Valin
public int Valin
Stopcodon
public int Stopcodon
gc
public int gc
Analyser
public Analyser()
- Sets all Register to zero
analyse
public void analyse(char[] genome)
- analyses a given RNA sequence
- Parameters:
genome
- the RNA sequence
countAllAminoacids
public float countAllAminoacids()
- Returns:
- the count of all resulting aminoacids
getVariables
public float getVariables()
- Returns:
- the count of the AminoAcids with synonymous substitutions
getAlanin
public int getAlanin()
- Returns:
- Returns the count of Alanine.
getArginin
public int getArginin()
- Returns:
- Returns the count of Arginine.
getArginin2
public int getArginin2()
- Returns:
- Returns the count of the 2nd form of Arginine.
getAsparagin
public int getAsparagin()
- Returns:
- Returns the count of Asparagine.
getAsparaginsaure
public int getAsparaginsaure()
- Returns:
- Returns the count of Aspartic acid.
getCystein
public int getCystein()
- Returns:
- Returns the count of Cysteine.
getGlutamin
public int getGlutamin()
- Returns:
- Returns the count of Glutamine.
getGlutaminsaure
public int getGlutaminsaure()
- Returns:
- Returns the count of Glutamic acid.
getGlycin
public int getGlycin()
- Returns:
- Returns the count of Glycine.
getHistidin
public int getHistidin()
- Returns:
- Returns the count of Histidine.
getIsoleucin
public int getIsoleucin()
- Returns:
- Returns the count of Isoleucine.
getLeucin
public int getLeucin()
- Returns:
- Returns the count of Leucine.
getLeucin2
public int getLeucin2()
- Returns:
- Returns the count of the 2nd form of Leucine.
getLysin
public int getLysin()
- Returns:
- Returns the count of Lysine.
getMethionin
public int getMethionin()
- Returns:
- Returns the count of Methionine.
getPhenylalanin
public int getPhenylalanin()
- Returns:
- Returns the count of Phenylalanine.
getProlin
public int getProlin()
- Returns:
- Returns the count of Proline.
getSerin
public int getSerin()
- Returns:
- Returns the count of Serine.
getSerin2
public int getSerin2()
- Returns:
- Returns the count of the 2nd form of Serine.
getStopcodon
public int getStopcodon()
- Returns:
- Returns the count of stopcodon.
getThreonin
public int getThreonin()
- Returns:
- Returns the count of Threonine.
getTryptophan
public int getTryptophan()
- Returns:
- Returns the count of Tryptophan.
getTyrosin
public int getTyrosin()
- Returns:
- Returns the count of Tyrosine.
getValin
public int getValin()
- Returns:
- Returns the count of Valine.